Compute biomarker inclusion frequencies across optimisation runs.

Compute biomarker inclusion frequencies across optimisation runs.

compute_inclusion_frequencies(
  panels,
  feature_type = c("features", "base_features")
)

Arguments

panels

List of OptimizationResult, BiomarkerPanelResult objects, character vectors of biomarkers, or a mixture of these. A single (unwrapped) OptimizationResult is also accepted.

feature_type

One of "features" (default) or "base_features". Controls whether transformed feature names (e.g. "A--B" for pairwise ratios) or base feature names (genes) are counted. Only relevant for OptimizationResult entries; BiomarkerPanelResult and character vector entries always use their stored feature names.

Value

Data frame with columns feature, count, and proportion.