Transformation of phyloseq data

Transformation of phyloseq data

psGather(
  ps,
  tax_list = c("Phylum", "Order", "Family", "Genus", "ASV"),
  prop_trans = T
)

Arguments

ps

a phyloseq object.
tax_list

Get taxonomic levels of data. By default, return the taxonomic of Phylum, Order, Family, Genus and ASV/OTU.
prop_trans

a logic variable to determine whether the data are as proportion. By default is TRUE.

Value

A list of data of different taxonomic levels.

Examples

data(PD)
ps1 <- psGather(PD$ps)