mosaicDataUpSet — mosaicDataUpSet • StabMap

Plots feature overlaps of mosaic data as an UpSet plot.

Usage

mosaicDataUpSet(assay_list, plot = FALSE, ...)

Arguments

assay_list: a list of data matrices with rownames (features) specified.
plot: logical (default FALSE) whether the UpSet plot should be printed.
...: further arguments passed to `upset` from the `UpSetR` package.

Value

UpSet object displaying degree of overlap of rownames (features) among each of the data matrices in assay_list. Set bars correspond to the number of cells/samples present in each data matrix.

Examples

set.seed(2021)
assay_list <- mockMosaicData()
lapply(assay_list, dim)
#> $D1
#> [1] 150  50
#> 
#> $D2
#> [1] 150  50
#> 
#> $D3
#> [1] 150  50
#> 
mosaicDataUpSet(assay_list)


# additional arguments from UpSetR::upset()
mosaicDataUpSet(assay_list, empty.intersections = TRUE)