Plotting the original and kontextual L values over a range of radii.

This function takes outputs from rsCurve and plots them in ggplot. If standard deviation is estimated in rsCurve, then confidence intervals will be constructed based on the standard deviation. If the confidence interval overlaps with 0, then the relationship is insignificant for that radius.

Usage

kontextPlot(rsDf)

Arguments

rsDf

A data frame from kontextCurve.

Value

A ggplotly object showing the original and kontextual L function values over a range of radii

Examples

data("kerenSCE")

kerenImage6 = kerenSCE[, kerenSCE$imageID =="6"]

rsDf <- kontextCurve(
  cells = kerenImage6,
  from = "p53",
  to = "Immune",
  parent = c("p53", "Keratin+Tumour"),
  rs = seq(10, 510, 100),
  cores = 2
)

kontextPlot(rsDf)