Convert Kontextual or state changes result to a matrix for classification — prepMatrix • Statial

Convert Kontextual or state changes result to a matrix for classification

Usage

prepMatrix(result, replaceVal = 0, column = NULL, test = NULL)

Arguments

result: a kontextual or state changes result data.frame.
replaceVal: value which NAs are replaced with.
column: The column which contains the scores that you want to select.
test: A column containing which will be the column names of the expanded matrix.

Examples

data("kerenSCE")


CD4_Kontextual <- Kontextual(
  cells = kerenSCE,
  r = 50,
  from = "Macrophages",
  to = "Keratin_Tumour",
  parent = c("Macrophages", "CD4_Cell"),
  image = "6"
)


kontextMat <- prepMatrix(CD4_Kontextual)