vignettes/case_study/CellBench_Data.Rmd
CellBench_Data.Rmd
This is a benchmarking single-cell data comprising of 3 different human lung adenocarcinoma cell lines. This experiment was designed induce different batch effects into the data.
Integration challenge
Type of merge | Name | ID | Author | DOI or URL | Protocol | Organism | Tissue | # of cell types | # of cells | # of batches | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Across platforms with significant depth difference | CellBench | CellBench | https://github.com/LuyiTian/CellBench_data | Cel-seq2, Drop-seq, 10x Chromium | Human | Adenocarcinoma cell lines | 3 | 1401 | 3 per cell types |
scMerge
article: Supplementary Figure
12.scMerge
data
Data availability: CellBench Data (in RData format)
scMerge
parameters for integration: