This is a mouse neuronal single-cell data comprising of 2 different experiments.

Integration challenge

  • Prior to integration, there is a strong separation effect by experiments and batches.

Data description

  • Data source:
Type of merge Name ID Author DOI or URL Protocol Organism Tissue # of cell types # of cells # of batches
Across different experiments Neuronal SRP065920 Tan 10.15252/msb.20156639 Smart‐Seq2 Mouse Neuronal 2 145 NA
GSE75413 Hanchate 10.1126/science.aad2456 STRT-seq
  • Relation to the scMerge article: Supplementary Figure 10.

Data visualisation

tSNE plots by cell types and batch

Integrated scMerge data