The result of spicy(diabetesData, condition = "stage", subject = "case", method = "image"): the original
image-level test of spicyR, for all pairs of cell types, comparing the onset and long-duration stages with
non-diabetic donors. It is used in examples, so that they run quickly.
Usage
data("spicyTest")Format
A SpicyResults object (see spicy).
Source
Made by inst/scripts/make-spicyTest.R from diabetesData.
Examples
data("spicyTest")
topPairs(spicyTest, n = 5)
#> intercept coefficient p.value adj.pvalue from to
#> beta__delta 6.081500e+01 -15.43325 0.0006616394 0.09171144 beta delta
#> delta__beta 6.090722e+01 -15.27636 0.0007164956 0.09171144 delta beta
#> B__Th -4.440892e-16 10.48012 0.0127535323 0.42316680 B Th
#> delta__delta 7.021912e+01 -16.35809 0.0155005358 0.42316680 delta delta
#> Th__B 2.220446e-15 10.00345 0.0173028313 0.42316680 Th B