Generating marker list using the reference data

Generating marker list using the reference data

generateMarkerList(
  sce_ref,
  exprs_values = "mean",
  q = 0.9,
  t = 0.25,
  verbose = TRUE,
  type = "positive"
)

Arguments

sce_ref

A SingleCellExperiment object

exprs_values

A string indicating which assay of `sce_ref` contains the expression values. Default is set to "mean".

q

A numeric indicates the quantile cutoff for selecting the marker list. By default is 0.9.

t

A numeric indicates the cutoff of that a marker allows to appear in maximum proportion of cell types. By default is 0.25.

verbose

A logical value indicates whether to print out running messages.

type

A string indicates whether to calculate positive or negative markers.

Value

A list object