Preprocessing the the spatial experiment data for SimpleSeg output (per sample).
readSimpleSeg_per_sample(
spe,
mask,
method_name = "SimpleSeg",
cell_id = "cell_id"
)
Arguments
- spe
A Spatial Experiment object for only one image ID.
- mask
The mask results from simpleSeg.
- method_name
A string indicates the method name of the cell segmentation.
- cell_id
A string indicates the cell ID column in SpatialExperiment object.