A function to visualise ligand receptor analysis

visLigandReceptor(
  sce,
  type = c("pval_heatmap", "pval_dotplot", "group_network", "group_heatmap",
    "lr_network"),
  receptor_type = NULL
)

Arguments

sce

A singlecellexperiment object

type

A character indicates the type of the plot for ligand receptor restuls visualisation, option includes "pval_heatmap", "pval_dotplot", "group_network", "group_heatmap", and "lr_network"

receptor_type

A character indicates which receptor expression's ligand receptor results are used to generate the figures.

Value

A plot visualise the ligand receptor results

Examples

data(lr_pair_subset, package = "CiteFuse") data(sce_control_subset, package = "CiteFuse") sce_control_subset <- normaliseExprs(sce = sce_control_subset, altExp_name = "ADT", transform = "zi_minMax") sce_control_subset <- normaliseExprs(sce = sce_control_subset, altExp_name = "none", exprs_value = "logcounts", transform = "minMax") sce_control_subset <- ligandReceptorTest(sce = sce_control_subset, ligandReceptor_list = lr_pair_subset, cluster = sce_control_subset$SNF_W_louvain, RNA_exprs_value = "minMax", use_alt_exp = TRUE, altExp_name = "ADT", altExp_exprs_value = "zi_minMax", num_permute = 100)
#> 100 ......
visLigandReceptor(sce_control_subset, type = "pval_heatmap", receptor_type = "ADT")