visualiseKNN

A function to perform louvain clustering

visualiseKNN(sce, colour_by = NULL, metadata = "SNF_W")

Arguments

sce	A singlecellexperiment object
colour_by	the name of coldata that is used to colour the node
metadata	indicates the meta data name of affinity matrix to virsualise

Value

A igraph plot

Examples

data(sce_control_subset, package = "CiteFuse")
sce_control_subset <- CiteFuse(sce_control_subset)
#> Calculating affinity matrix 
#> Performing SNF  
SNF_W_louvain <- igraphClustering(sce_control_subset,
method = "louvain")
visualiseKNN(sce_control_subset, colour_by = "SNF_W_louvain")