Build NEMoE object from list, dataframe or matrix — NEMoE

This function build NEMoE object from List, dataframe or matrix.

NEMoE_buildFromList(
  Microbiome,
  Nutrition,
  Response,
  K = NULL,
  cvParams = list(),
  taxLevel = NULL,
  taxTab = NULL,
  standardize = TRUE,
  ...
)

Arguments

Microbiome	A list of transformed microbiome data of different taxonomic level. If it is a dataframe or matrix, will convert to a list automatically.
Nutrition	A dataframe of matrix of Nutrition matrix.
Response	A numeric(factor) vector of Health outcome.
K	A integer of number of latent class.
cvParams	A list of cross validation parameters.
taxLevel	A character of selected name of taxonomic levels.
taxTab	A dataframe of taxonomic table.
standardize	Logical flag for x variable standardization. Default is standardize=TRUE.
...	Other parameters can pass to NEMoE_buildFromList. See `createParameterList`

Value

A NEMoE object.

Examples

data(PD)
data_list = PD$data_list
Microbiome = data_list$Microbiom
Nutrition = data_list$Nutrition
Response = data_list$Response
NEMoE <- NEMoE_buildFromList(Microbiome = Microbiome, Nutrition = Nutrition, Response = Response)