All functions

PD16Sdata PD16Sdata-package

Eleven 16S gut microbiome Parkinson's disease dataset

data_info

A dataframe contain information about all the dataset

ID

Dataset name

DOI

DOI of related paper

PRJ

Project access number in EBI or NCBI

National

Cohort national

Targeted

Targeted region of the sequence

Truncated

Parameters of truncation in dada2 pipeline

...

ps_list

A list of phyloseq contain both 16S sequence data and metadata

ps_Hill_Burns

A phyloseq object contain 332 samples from Hill-Burns et al.

ps_Aho

A phyloseq object contain 266 samples from Aho et al.

ps_Vascellari

A phyloseq object contain 114 samples from Vascellari et al.

ps_Weils

A phyloseq object contain 256 samples from Weils et al.

ps_Heinzel

A phyloseq object contain 663 samples from Heinzel et al.

ps_Scheperjans

A phyloseq object contain 148 samples from Scheperjans et al.

ps_Ren

A phyloseq object contain 39 samples from Ren et al.

ps_Jin

A phyloseq object contain 133 samples from Jin et al.

ps_Wallen1

A phyloseq object contain 507 samples from Wallen et al. (Dataset2 in theri paper)

ps_Wallen2

A phyloseq object contain 333 samples from Aho et al.(Dataset1 in theri paper)

ps_Lubomski

A phyloseq object contain 577 samples from Lubomski et al.