Function to make nice surfaces using ggplot

Function to make nice surfaces using ggplot

ggSurface(
  GAM,
  data,
  XYZ = NA,
  predict_val = NA,
  surf_min = NA,
  surf_max = NA,
  x.limits = NA,
  y.limits = NA,
  z.val = NA,
  exclude = NA,
  subtitle = "",
  lab_size = 3,
  nlevels = 5,
  contour_at = NA,
  skip = 0,
  axis_size = 15,
  axis_lab_size = 15
)

Arguments

GAM	A gam function for prediction
data	A dataframe contain all observed data
XYZ	XY axis used for plot, Z axis will be used as median, can be multiple Z.
predict_val	set additional predict parameters for gam fitting. e.g. predict_val = data.frame(Meta2 = "control")
surf_min	minimal value of the fitted surface. If it is NA, the minimal value is determined by fitted value.
surf_max	maximal value of the fitted surface. If it is NA, the maximal value is determined by fitted value.
x.limits	Limits of x axis. If it is NA, the limits is determined by input data.
y.limits	Limits of y axis. If it is NA, the limits is determined by input data.
z.val	Value of z to be plotted. Plot will condition on z.val and fit f(x,y,z=z.val).
exclude	Point exclude from prediction used in predict.gam. By default is NA.
subtitle	Subtitle of the figure.
lab_size	label size in contour.
nlevels	Number of levels in contour. By default is 5.
contour_at	A vector indicates where to draw the contour.
skip	Number of contours to skip.
axis_size	axis.text size.
axis_lab_size	axis.title size.

Value

A ggplot type object of NGF.