hierarchy( dat_list, assay, k = 5, rep, newAssay = NULL, balanced = FALSE, negCtl = NULL, hOrder = NULL )
A list of SummarizedExperiment data where each object represents a batch.
An assay name to measure the missingness of the signals.
A name of the variable in the colData of each SummarizedExperiment
data in the
A name of the new assay for cleaned (preprocessed) data.
A type of hierarchical approach, "concatenate" or "balanced". Default is "concatenate" approach.
A vector of row IDs for selection of stable matbolites to be used as negative control in RUV.
A vector of batch names from names of list
A normalised data as SummarizedExperiment object.