Plots result of signifPlot.

Usage

signifPlot(
  results,
  fdr = FALSE,
  type = "bubble",
  breaks = NULL,
  comparisonGroup = NULL,
  colours = c("#4575B4", "white", "#D73027"),
  marksToPlot = NULL,
  cutoff = 0.05,
  contextColours = NULL,
  contextLabels = waiver()
)

Arguments

results: A spicy results object
fdr: TRUE if FDR correction is used.
type: Whether to make a bubble plot or heatmap. Note: For survival results a bubble plot will be used.
breaks: Vector of 3 numbers giving breaks used in legend. The first number is the minimum, the second is the maximum, the third is the number of breaks.
comparisonGroup: A string specifying the name of the outcome group to compare with the base group.
colours: Vector of colours to use to colour legend.
marksToPlot: Vector of marks to include in plot.
cutoff: significance threshold for circles in bubble plot.
contextColours: Used for Kontextual results. A named list specifying the colours for each context. By default the Tableau colour palette is used.
contextLabels: Used for Kontextual results. A named list to change the default labels for each context.

Value

a ggplot or pheatmap object

Examples

data(spicyTest)

p <- signifPlot(spicyTest, breaks = c(-3, 3, 0.5))
# plot includes unicode characters, do not use default pdf device
ggplot2::ggsave(p, filename = tempfile(), device = cairo_pdf)
#> Saving 7 x 7 in image