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bind()
- Produces a dataframe showing L-function metric for each imageID entry.
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colTest()
- Perform a simple wilcoxon-rank-sum test or t-test on the columns of a data frame
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convPairs()
- Converts colPairs object into an abundance matrix based on number of nearby interactions for every cell type.
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diabetesData
- Diabetes IMC data in SCE format.
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getPairwise()
- Get statistic from pairwise L curve of a single image.
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getProp()
- Get proportions from a SummarizedExperiment.
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signifPlot()
- Plots result of signifPlot.
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spicy()
- Performs spatial tests on spatial cytometry data.
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spicyBoxPlot()
- Plots boxplot for a specified cell-cell relationship
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spicyTest
- Results from spicy for diabetesData
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topPairs()
- A table of the significant results from spicy tests