Plots boxplot for a specified cell-cell relationship — spicyBoxPlot • spicyR

Plots boxplot for a specified cell-cell relationship

Usage

spicyBoxPlot(results, from = NULL, to = NULL, rank = NULL)

Arguments

results: Data frame obtained from spicy.
from: Cell type which you would like to compare to the to cell type.
to: Cell type which you would like to compare to the from cell type.
rank: Ranking of cell type in terms of p-value, the smaller the p-value the higher the rank.

Value

a ggplot2 boxplot

Examples

data(spicyTest)

spicyBoxPlot(spicyTest,
             rank = 1)
#> Warning: Removed 53 rows containing non-finite outside the scale range
#> (`stat_boxplot()`).