Build DatasetTask submission rows from a Trio object

This helper creates one DatasetTask row per supporting evidence name in the Trio object. It does not upload anything and does not modify the existing writeCTD() path.

Usage

buildDatasetTaskSubmission(
  trio,
  datasetID = NA_character_,
  taskStage,
  taskType,
  taskName
)

Arguments

trio

A Trio object.

datasetID

Dataset identifier to link tasks to. Defaults to NA so the backend can fill it later.

taskStage

A character vector giving the task stage for each task row.

taskType

A character vector giving the task type for each task row.

taskName

A character vector giving the task name for each task row.

Value

A data.frame matching the proposed DatasetTask table schema. datasetTaskID is left as NA.

Examples

data <- data.frame(feature = c(1, 2, 3), row.names = paste0("sample", 1:3))
labels <- factor(c("A", "B", "A"))
names(labels) <- rownames(data)
trio <- Trio$new(
  data = data,
  evidence = list(class_labels = list(
    evidence = labels,
    metrics = "macroF1Metric"
  )),
  metrics = list(macroF1Metric = macroF1Metric),
  name = "example_dataset",
  description = "A small example dataset."
)
buildDatasetTaskSubmission(
  trio,
  taskStage = "prediction",
  taskType = "classification",
  taskName = "class_prediction"
)
#>   datasetTaskID datasetID  taskStage       taskType         taskName
#> 1          <NA>      <NA> prediction classification class_prediction