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Changelog

Source: NEWS.md

clustSIGNAL v0.99.7 (2025-01-08)

  • Minor updates.
  • Renamed the example dataset from example.RData to ClustSignal_example.RData
  • Updated DESCRIPTION file to add bluster package version (>= 1.16.0) required to run ClustSIGNAL.

clustSIGNAL v0.99.6 (2024-12-11)

  • Modified adaptiveSmoothing() function to improve its runtime.
  • Improved the tutorial vignette content.
  • Added step-by-step ClustSIGNAL run guide to the tutorial vignette.
  • Removed the user parameter cells. The package automatically uses the column names of the input SpatialExperiment object as the cell ID.
  • Added a cell id check - throws error if duplicates found among column names of input SpatialExperiment object.

clustSIGNAL v0.99.5 (2024-11-28)

  • Fixed issue where absence of spatial coordinates was not throwing error at the beginning of the run.

clustSIGNAL v0.99.4 (2024-11-28)

  • Corrected character check for output format type.

clustSIGNAL v0.00.3 (2024-10-31)

  • Clustering parameter options added to package
  • Initial and final clustering steps are now in separate functions
  • Test units added to the package

clustSIGNAL v0.00.2 (2024-10-08)

  • Updated parallel runs in smoothing function for faster runs

clustSIGNAL v0.99.0 (2024-09-19)

  • Submitted to Bioconductor.