Package index • lisaClust

All functions

hatchingPlot() geom_hatching(): hatchingPlot
inhomLocalK(): Calculate the inhomogenous local K function.
lisa(): Generate local indicators of spatial association
lisaClust(): Use k-means clustering to cluster local indicators of spatial association. For other clustering use lisa.
nameRegions(): Name regions by the cell types they are enriched for
regionBoxPlot(): Compare the share of each region between groups
regionMap(): Plot heatmap of cell type enrichment for lisaClust regions
scale_region() scale_region_manual(): Scale constructor for regions