Cohen et al. Mouse Lung Data

Yingxin Lin

Source: vignettes/webOnly/Cohen_mouseLung.Rmd

Train Model

## Class: scClassifyTrainModel 
## Model name: Cohen_lung 
## Feature selection methods: limma 
## Number of cells in the training data: 20931 
## Number of cell types in the training data: 20

Cell type composition:

Cell Tpye Freq
AT1 1346
AT2 1138
B cell 633
Baso 164
ciliated cell 56
Clara cell 134
dendritic cell 377
endothelial cell 3428
epithelial cell 647
ILC 204
macrophage 3675
Mast cell 155
Matrix 949
monocyte 2583
natural killer cell 225
Neutrophils 2371
Pericytes 94
Smooth muscle cells 722
stromal cell 1777
T cell 253

Visualisation

tSNE

Cell Type Tree

Reference

Cohen, M. et al., 2018. Lung Single-Cell Signaling Interaction Map Reveals Basophil Role in Macrophage Imprinting. Cell.