MacParland et al. Human Liver Data

Yingxin Lin

Train Model

## Class: scClassifyTrainModel 
## Model name: MacParland_liver 
## Feature selection methods: limma 
## Number of cells in the training data: 8444 
## Number of cell types in the training data: 14

Cell type composition:

Cell Tpye	Freq
ab T	961
Central venous liver sinusoidal endothelial cells	327
cholangiocytes	119
Erythroid cells	93
gd T	569
Hepatocytes	3501
Inflammatory Macs	813
Mature B cells	129
NK cells	488
Non-inflammatory Macs	379
Periportal liver sinusoidal endothelial cells	306
Plasma cells	511
Portal endothelial cells	211
Stellate cells	37

Visualisation

tSNE

Cell Type Tree

Reference

MacParland, S.A. et al., 2018. Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations. Nature Communications.