Train Model

## Class: scClassifyTrainModel 
## Model name: TasicV2_neuronal 
## Feature selection methods: limma 
## Number of cells in the training data: 13586 
## Number of cell types in the training data: 23

Cell type composition:

Cell Tpye Freq
Astro 361
CR 7
Endo 76
L2/3 IT 969
L4 1350
L5 IT 812
L5 PT 536
L6 CT 953
L6 IT 1836
L6b 329
Lamp5 1070
Macrophage 51
Meis2 44
NP 338
Oligo 91
Peri 28
Pvalb 1211
Serpinf1 26
SMC 55
Sncg 125
Sst 1567
Vip 1690
VLMC 61

Visualisation

tSNE

Cell Type Tree

Reference

Tasic, B. et al., 2018. Shared and distinct transcriptomic cell types across neocortical areas. Nature.