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cellTypeTrain()
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Accessors of cellTypeTrain for scClassifyTrainModel |
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cellTypeTree()
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Accessors of cellTypeTree for scClassifyTrainModel |
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.scClassifyTrainModel()
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The scClassifyTrainModel class |
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features()
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Accessors of features for scClassifyTrainModel |
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getN()
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Function to get the required N given by the accuracy and
the learning curve model |
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learningCurve()
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Fit learning curve for accuracy matrix |
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model()
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Accessors of model for scClassifyTrainModel |
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modelweights()
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Accessors of modelweights for scClassifyTrainModel |
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name()
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Accessors of name for scClassifyTrainModel |
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plotCellTypeTree()
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To plot cell type tree |
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predict_scClassify()
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Testing scClassify model |
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predict_scClassifyJoint()
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Testing scClassify model (joint training) |
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runHOPACH()
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Create HOPACH tree |
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runSampleCal()
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Run sample size calculation for pilot data for reference dataset |
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scClassify()
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Train and test scClassify model |
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scClassifyTrainModel-class
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An S4 class to stored training model for scClassify |
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scClassifyTrainModelList-class
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An S4 class to stored a list of training models from scClassify |
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scClassifyTrainModelList()
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The scClassifyTrainModelList class |
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scClassify_example
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Example data used in scClassify package |
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trainClassExample_wang
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Subset of pretrained model of Wang et al. |
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trainClassExample_xin
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Subset of pretrained model of Xin et al. |
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train_scClassify()
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Training scClassify model |