All functions

cellTypeTrain()

Accessors of cellTypeTrain for scClassifyTrainModel

cellTypeTree()

Accessors of cellTypeTree for scClassifyTrainModel

.scClassifyTrainModel()

The scClassifyTrainModel class

features()

Accessors of features for scClassifyTrainModel

getN()

Function to get the required N given by the accuracy and the learning curve model

learningCurve()

Fit learning curve for accuracy matrix

model()

Accessors of model for scClassifyTrainModel

modelweights()

Accessors of modelweights for scClassifyTrainModel

name()

Accessors of name for scClassifyTrainModel

plotCellTypeTree()

To plot cell type tree

predict_scClassify()

Testing scClassify model

predict_scClassifyJoint()

Testing scClassify model (joint training)

runHOPACH()

Create HOPACH tree

runSampleCal()

Run sample size calculation for pilot data for reference dataset

scClassify()

Train and test scClassify model

scClassifyTrainModel-class

An S4 class to stored training model for scClassify

scClassifyTrainModelList-class

An S4 class to stored a list of training models from scClassify

scClassifyTrainModelList()

The scClassifyTrainModelList class

scClassify_example

Example data used in scClassify package

trainClassExample_wang

Subset of pretrained model of Wang et al.

trainClassExample_xin

Subset of pretrained model of Xin et al.

train_scClassify()

Training scClassify model