Train Model

## Class: scClassifyTrainModel 
## Model name: Tabula Muris 
## Feature selection methods: limma 
## Number of cells in the training data: 41965 
## Number of cell types in the training data: 68

Cell type composition:

Cell Tpye Freq
astrocyte of the cerebral cortex 403
B cell 3834
basal cell 1275
basal cell of epidermis 1435
basal cell of urothelium 99
Bergmann glial cell 30
bladder cell 532
brain pericyte 132
Brush cell of epithelium proper of large intestine 45
cardiac muscle cell 140
ciliated cell 14
Clara cell 13
dendritic cell 69
endocardial cell 175
endothelial cell 3598
endothelial cell of hepatic sinusoid 196
enterocyte of epithelium of large intestine 782
enteroendocrine cell 25
epicardial adipocyte 93
epidermal cell 445
epithelial cell 188
epithelial cell of large intestine 1793
erythrocyte 11
fenestrated cell 69
fibroblast 2152
Fraction A pre-pro B cell 177
granulocyte 789
hematopoietic cell 17
hematopoietic stem cell 1291
hepatocyte 399
keratinocyte 361
keratinocyte stem cell 1371
kidney collecting duct cell 44
kidney tubule cell 261
Kupffer cell 51
large intestine goblet cell 814
leukocyte 718
luminal epithelial cell of mammary gland 552
lung neuroendocrine cell 2
macrophage 176
mesenchymal cell 656
mesenchymal stem cell 519
mesenchymal stem cell of adipose 1924
mesothelial cell 2
microglial cell 4329
monocyte 389
myeloid cell 527
natural killer cell 336
neuron 196
neuronal stem cell 36
neutrophil 820
oligodendrocyte 1186
oligodendrocyte precursor cell 202
pancreatic A cell 287
pancreatic acinar cell 177
pancreatic D cell 91
pancreatic ductal cell 131
pancreatic PP cell 107
pancreatic stellate cell 29
skeletal muscle satellite cell 546
skeletal muscle satellite stem cell 442
smooth muscle cell 296
stem cell of epidermis 45
stromal cell 1363
T cell 2251
type B pancreatic cell 411
type I pneumocyte 2
type II pneumocyte 94

Visualisation

tSNE