Hrvatin et al. Mouse Neuronal Data
Yingxin Lin
Source:vignettes/webOnly/Hrvatin_mouseNeuronal.Rmd
Hrvatin_mouseNeuronal.RmdTrain Model
## Class: scClassifyTrainModel
## Model name: hrvatin_neuronal
## Feature selection methods: limma
## Number of cells in the training data: 48266
## Number of cell types in the training data: 20Cell type composition:
| Cell Tpye | Freq |
|---|---|
| Astro | 7039 |
| Cck | 91 |
| Endo | 3450 |
| HPC | 137 |
| L2/3 | 2963 |
| L4 | 3198 |
| L5 | 3793 |
| L6 | 3276 |
| Macrophage | 537 |
| Micro | 10158 |
| Npy | 137 |
| Oligo | 8630 |
| OPC | 1826 |
| Pericyte | 782 |
| Pvalb | 227 |
| RSP | 420 |
| SMC | 621 |
| Sst | 355 |
| Sub | 500 |
| Vip | 126 |
Visualisation
Reference
Hrvatin, S. et al., 2018. Single-cell analysis of experience-dependent transcriptomic states in the mouse visual cortex. Nature Neuroscience, 21(1), pp.120–129. Available at: https://doi.org/10.1038/s41593-017-0029-5.