Tasic et al. (2016) Mouse Neuronal Data

Yingxin Lin

17/09/2019

Train Model

## Class: scClassifyTrainModel 
## Model name: TasicV1_neuronal 
## Feature selection methods: limma 
## Number of cells in the training data: 1679 
## Number of cell types in the training data: 20

Cell type composition:

Cell Tpye	Freq
Astro	43
Endo	29
Igtp	10
L2	21
L2/3	95
L4	222
L5	69
L5a	119
L5b	67
L6a	136
L6b	35
Micro	22
Ndnf	66
Oligo	38
OPC	22
Pvalb	275
Smad3	13
Sncg	9
Sst	202
Vip	186

Visualisation

tSNE

Cell Type Tree

Reference

Tasic, B. et al., 2016. Adult mouse cortical cell taxonomy revealed by single cell transcriptomics. Nature Neuroscience.